PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G14470.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 326aa    MW: 35742.4 Da    PI: 7.1876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G14470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12188213126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  ONIVA02G14470.1 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.1E-14260306IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.58E-13264307No hitNo description
PfamPF139202.1E-8264305No hitNo description
CDDcd001621.42E-7265306No hitNo description
PROSITE profilePS5008910.734265303IPR001841Zinc finger, RING-type
SMARTSM001849.1E-5265302IPR001841Zinc finger, RING-type
PROSITE patternPS005180280289IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MADGGGGGEA GSGGSAPVCS FVRKPPKNIR KRPTAPAVSD DDDEDGSGAI AAARAKKAPS  60
STSKLFFSSA DGSSEPRRFQ YESSRTIQAS TDSRATATLE TETEFDRDAR AIRERQLKQA  120
EESLKKNPSA PASGSGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI  180
RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM  240
GGDGSDDEAG EEDDDDDEEA LPFACYICRE PFVDPVVTKC KHYFCEHCAL KHHSKNKKCF  300
VCNKPTLGIF NAAQEIRKKM AQDKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A8e-202613201473Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315670.0CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622931.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V30.0C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0E0G5940.0A0A0E0G594_ORYNI; Uncharacterized protein
STRINGBGIOSGA008020-PA0.0(Oryza sativa Indica Group)
STRINGORGLA02G0118200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-123C3H family protein